CHARLES ALAN JACOBY

Assistant Professor and Extension Specialist in Estuarine Ecology
Department of Fisheries and Aquatic Sciences and Florida Sea Grant
University of Florida
7922 NW 71st Street
Gainesville FL 32653-3071 USA
telephone: 1-352-392-9617 extension 272
facsimile: 1-352-392-3672
e-mail: cajacoby@ufl.edu

MBA (Marketing specialization) 2001 University of Western Australia, Nedlands, Western Australia, Australia

PhD (Biological Sciences) 1980 Stanford University, Palo Alto, California, USA

recipient of:

Biological Sciences Fellowships
Achievement Rewards for College Scientists Foundation Fellowships
Arthur C. Giese Award for Best Original Experimental Work in Marine Biology

MS (Biological Sciences) 1976 Illinois State University, Normal, Illinois, USA recipient of: Rilett Scholarship Outstanding Masters Student award

BS (Biological Sciences) 1974 Illinois State University, Normal, Illinois, USA recipient of: Stephen M. Bailey Memorial Scholarship Undergraduate Teaching Fellowships Bachelor of Science with High Honors

2001-present: Assistant Professor and Extension Specialist in Estuarine Ecology, Department of Fisheries and Aquatic Sciences and Florida Sea Grant, University of Florida, Gainesville, Florida, USA

1999-2001: Senior Research Scientist and Business Development Manager, CSIRO Environmental Projects Office and Division of Petroleum Research, Floreat Laboratories, Floreat, Western Australia, Australia

1992-1999: Senior Research Scientist, Project Leader and Acting Officer-in-Charge, CSIRO Division of Marine Research and Division of Fisheries, Marmion Marine Laboratories, North Beach, Western Australia, Australia

1988-1992: Senior Research Scientist, Project Leader and Acting Officer-in-Charge CSIRO Division of Fisheries, Jervis Bay Regional Marine Laboratory, Jervis Bay, New South Wales, Australia

1986-1989: Postdoctoral Fellow, Leigh Marine Laboratory, University of Auckland, Leigh, New Zealand 1986: Visiting Scientist, Harbor Branch Oceanographic Institution, Fort Pierce, Florida, USA

1984-1986: Queen's Fellow in Marine Science, University of Queensland, Brisbane, Queensland, Australia

1982-1983: Research Associate, Harbor Branch Oceanographic Institution, Fort Pierce, Florida, USA

1980-1982: Postdoctoral Fellow, Harbor Branch Oceanographic Institution, Fort Pierce, Florida, USA

PUBLICATIONS

Refereed Papers

1) Jacoby, C.A. 1981. Behavior of the purple shore crab Hemigrapsus nudus Dana 1851. Journal of Crustacean Biology 1: 531-544.

2) Jacoby, C.A. 1982. Behavioral responses of the larvae of Cancer magister Dana 1852 to light, pressure, and gravity. Marine Behaviour and Physiology 8: 267-283.

3) Jacoby, C.A. 1983. Ontogeny of behavior in the crab instars of the Dungeness crab, Cancer magister Dana 1852. Zeitschrift fŸr tierpsychologie 63: 1-16.

4) Jacoby, C.A. and M.J. Youngbluth. 1983. Mating in three species of Pseudodiaptomus (Copepoda: Calanoida). Marine Biology 76: 77-86.

5) Jacoby, C.A. and J.G. Greenwood. 1988. Spatial, temporal, and behavioral patterns in emergence of zooplankton from the lagoon at Heron Reef, Great Barrier Reef, Australia. Marine Biology 97: 309-328.

6) Youngbluth, M.J., P. Kremer, T.G. Bailey, and C.A. Jacoby. 1988. Chemical composition, metabolic rates and feeding behavior of the midwater ctenophore Bathocyroe fosteri. Marine Biology 98: 87-94.

7) Jacoby, C.A. and J.G. Greenwood. 1989. Emergent zooplankton in Moreton Bay, Queensland, Australia: seasonal, lunar, and diel patterns in emergence and distribution with respect to substrata. Marine Ecology Progress Series 51: 131-154.

8) Youngbluth, M.J., T.G. Bailey, P.J. Davoll, C.A. Jacoby, P.I. Blades-Eckelbarger, and C.A. Griswold. 1989. Fecal pellet production and diel migratory behavior by the euphausiid Meganyctiphanes norvegica effect benthic-pelagic coupling. Deep Sea Research 36: 1491-1501.

9) Jacoby, C.A. and J.G. Greenwood. 1991. Species specific variations in emergence of coexisting Stephos and Pseudodiaptomus (Copepoda, Calanoida). Proceedings of the Fourth International Conference on Copepoda, Karuiza-wa, Japan: Bulletin of the Plankton Society of Japan Special Volume: 405-418.

10) Tricklebank, K.A., C.A. Jacoby, and J.C. Montgomery. 1992. Composition, distribution and abundance of neustonic ichthyoplankton off northeastern New Zealand. Estuarine, Coastal and Shelf Science 34: 263-275.

11) Ward, T.J. and C.A. Jacoby. 1992. A strategy for assessment and management of marine ecosystems: baseline and monitoring studies in Jervis Bay, a temperate Australian embayment. Marine Pollution Bulletin 25: 163-171.

12) Jacoby, C.A. and T.J. Ward. 1993. An algal bloom in Jervis Bay, New South Wales, Australia. Marine Pollution Bulletin 26: 295-296.

13) Jacoby, C.A. 1993. The role of monitoring in marine environmental management. pp.: 137-152. In: Evans, L.H. (ed.). Proceedings of the Ecotoxicology Symposium: ecotoxicology and protection of the marine environment with emphasis on Western Australia. Curtin University of Technology: Perth. 183 pp.

14) Jacoby, C.A. 1993. Environmental impact assessment and monitoring: examples form the Jervis Bay Marine Ecological Studies. pp.: 35-49. In: Greenwood, J.G. (ed.). The future of marine science in Moreton Bay. School of Marine Science, The University of Queensland, Brisbane. 184 pp.

15) Hutchings, P.A. and C.A. Jacoby. 1994. Temporal and spatial patterns in the distribution of infaunal polychaetes in Jervis Bay, NSW, Australia. In: Dauvin, J.C., L. Laubier and D.J. Reish (eds.), Actes de la 4eme Conference internationale des Polychetes. Memoires due Museum national d'Histoire naturelle 162: 441-452.

16) Jacoby, C.A. 1994. The role of monitoring in environmental management. pp.: 28-34. In: Brunckhorst, D.J. (ed.). Marine protected areas and biosphere reserves: Ôtowards a new paradigm'. Proceedings of the 1st International Workshop on Marine and Coastal Protected Areas, Canberra, Australia. August 1994. 98 pp.

17) Clarke, P.J. and C.A. Jacoby. 1994. Biomass and above-ground productivity of salt-marsh plants in south-eastern Australia. Australian Journal of Marine and Freshwater Research 45: 1521-1528.

18) Ward, T.J. and C.A. Jacoby. 1995. Deciphering spatiotemporal dynamics: what can mesocosm experiments do to improve predictions of environmental impacts? Australasian Journal of Ecotoxicology 1: 51-54.

19) Jacoby, C. 1996. Monitoring programs: design and evaluation. pp.: 93-103. In: Ward, T.J. (ed.). Proceedings of the workshop on eutrophication in tropical marine systems - the impacts and management of nutrient pollution. RCU/EAS Technical Series Report number 8. UNEP. 137 pp.

20) Jacoby, C. 1996. Use of video to sample benthic habitats: examples from Jervis Bay. pp.: 340-351. In: Blake, S. (ed.). Australian Marine Data Collection and Management Guidelines. 387 pp.

21) Kendrick, G.A., C.A. Jacoby and D.H. Heinemann. 1996. Benthic microalgae: comparisons of chlorophyll a in mesocosms and field sites. Hydrobiologia 326/327: 283-289.

22) Vanderklift, M.A., T.J. Ward and C.A. Jacoby. 1996. Effect of reducing taxonomic resolution on ordinations to detect pollution-induced gradients in macrobenthic infaunal assemblages. Marine Ecology Progress Series 136: 137-145.

23) Langtry, S.K. and C.A. Jacoby. 1996. Fish and decapod crustaceans inhabiting drifting algae in Jervis Bay, New South Wales. Australian Journal of Ecology 21: 264-271

. 24) Jacoby, C., C. Manning, S. Fritz and L. Rose. 1997. Three recent initiatives for monitoring of Australian coasts by the community. Ocean and Coastal Management 36: 205-226.

25) Kendrick, G.A., S. Langtry, J. Fitzpatrick, R. Griffiths and C.A. Jacoby. 1998. Benthic microalgae and nutrient dynamics in wave-disturbed environments in Marmion Lagoon, Western Australia, compared with less disturbed mesocosms. Journal of Experimental Marine Biology and Ecology 228: 83-105.

26) Vanderklift, M.A., C.A. Jacoby and P. Horowitz. 1998. Beach seines with a combination of mesh sizes as a tool for sampling nearshore mobile macrofaunal assemblages. Marine and Freshwater Research 49: 513-516.

27) Kennedy, A.D. and C.A. Jacoby. 1999. Biological indicators for monitoring marine environmental health: meiofauna - a neglected benthic component? Environmental Monitoring and Assessment 54: 47-68.

28) Jacoby, C. 2000. Jervis Bay Cumulative Impact Monitoring Program. RipRap 17: 16-19.

29) Jacoby, C. in press. What does science have to do with integrated management. Conservation through cooperation: proceedings of a conference on integrated management for the Jervis Bay Region. New South Wales Parks and Wildlife.

30) Greenwood, J.G., M.J. Tucker and C.A. Jacoby. in press. Five new species of Stephos (Copepoda, Calanoida, Stephidae) from eastern Australia and the Gulf of Carpentaria, and description of the female of Stephos morii. Journal of Plankton Research.

Book Chapters

1) Youngbluth, M.J., T.G. Bailey, P.J. Davoll, C.A. Jacoby, P.I. Blades-Eckelbarger, and C.A. Griswold. 1988. Epibenthic krill impact particle fluxes and food webs: detection by submersible. In: Babb, I. and M. DeLuca (eds.). Benthic productivity and marine resources of the Gulf of Maine. National Undersea Research Report 88-3: 205-214

. 2) Youngbluth, M.J., T.G. Bailey, and C.A. Jacoby. 1990. Biological explorations in the mid-ocean realm: food webs, particle flux, and technological advancements. pp.: 191-208. In: Lin, Y.C. and K.K. Shida (eds.). Man in the Sea Vol. II. Best Publishing: San Pedro. 232 pp.

3) Jacoby, C.A., S.K. Langtry, D.J. Ferrell, M.P. Lincoln Smith, C.A. Hair, D.G. Worthington, S.E. McNeill and J.D. Bell. 1995. Shallow water fish and mobile macroinvertebrate assemblages. pp.: 149-151. In: Georges, A., G. Cho and R. Stoutjesdijk (eds.). Kowari 5, Jervis Bay: a cultural, scientific and educational resource. Australian Nature Conservation Agency. 204 pp.

4) Jacoby, C., B.G. Wallner, S.K. Langtry and P.A. Hutchings. 1995. Deepwater fauna and flora. pp.: 157-162. In: Georges, A., G. Cho and R. Stoutjesdijk (eds.). Kowari 5, Jervis Bay: a cultural, scientific and educational resource. Australian Nature Conservation Agency. 204 pp.

5) Cho, G., A. Georges, G. Worboys, C.A. Jacoby and R. Stoutjesdijk. 1995. Conservation management and the future. pp.: 179-187. In: Georges, A., G. Cho, R. Stoutjesdijk and R. Longmore (eds.). Kowari 5, Jervis Bay: a cultural, scientific and educational resource. Australian Nature Conservation Agency. 204 pp.

1) Pitsas, N., C.A. Jacoby and T.J. Ward. 1995. Ecotrekker. Computer game dealing with monitoring. CSIRO, Canberra, Australian Capital Territory.

2) Hauxwell, J., C. Jacoby, T.K. Frazer and J. Stevely, 2001. Nutrients and Florida's coastal waters: the links between people, increased nutrients, and changes to coastal aquatic systems. Florida Sea Grant, Gainesville, Florida. 10 pp.

1) Jacoby, C.A. 1988. Mobile fauna of sandy beaches. pp. 45-78. In: Jervis Bay baseline studies: first progress report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 168 pp.

2) Jacoby, C.A. 1989. Twofold Bay: a preliminary survey. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 41 pp.

3) Jacoby, C.A. 1989. Mobile fauna of sandy beaches. pp. 79-117. In: Jervis Bay baseline studies: second progress report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 232 pp.

4) Jacoby, C.A. 1990. Mobile fauna of sandy beaches. pp. 89-186. In: Jacoby, C.A. (ed.). Jervis Bay baseline studies: third progress report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 336 pp.

5) Jacoby, C.A. 1990. Deepwater fauna and flora. pp. 187-216. In: Jacoby, C.A. (ed.). Jervis Bay baseline studies: third progress report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 336 pp

. 6) Jacoby, C.A. (editor). 1990. Jervis Bay baseline studies: third progress report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 336 pp.

7) Jacoby, C.A. 1991. Mobile fauna of sandy beaches. pp. 45-88. In: Jacoby, C.A. (ed.). Jervis Bay baseline studies: fourth progress report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 326 pp.

8) Jacoby, C.A. 1991. Deepwater fauna and flora. pp. 89-126. In: Jacoby, C.A. (ed.). Jervis Bay baseline studies: fourth progress report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 326 pp.

9) Jacoby, C.A. (editor). 1991. Jervis Bay baseline studies: fourth progress report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 326 pp.

10) Jacoby, C.A. 1991. "Environmental survey of the lower Shoalhaven River": a review of the report produced by the Water Branch of the New South Wales State Pollution Control Commission. Report commissioned to Associated Pulp and Paper Mills, Proprietary Limited. 7 pp

. 11) Jacoby, C.A. 1991. Assessment of impacts on Posidonia beds from Operation Termite Spray 1991. Report commissioned by the Australian Department of Defence. 2 pp.

12) Jacoby, C.A. 1993. Report on the algal bloom in Jervis Bay during December 1992. Report submitted to the Australian Nature Conservation Authority. 21 pp.

13) Ward, T. and C. Jacoby. 1993. Preliminary evaluation of MASS (a software package for monitoring the conservation status of species, habitats and protected areas). Report submitted to the Great Barrier Reef Marine Park Authority. 4 pp.

14) Jacoby, C. (editor). 1993. Marine mesocosms: design and applications. Report submitted to the National Pulp and Paper Research Program. 167 pp.

15) Jacoby, C.A. 1994. Introduction. pp. 3-30. In: Jacoby, C.A. (ed.). Jervis Bay baseline studies: final report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 1282 pp.

16) Jacoby, C.A. and S.K. Langtry. 1994. Mobile fauna of sandy beaches. pp. 187-364. In: Jacoby, C.A. (ed.). Jervis Bay baseline studies: final report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 1282 pp.

17) Wallner, B.G. and C.A. Jacoby. 1994. Deepwater flora and fauna. pp. 367-448. In: Jacoby, C.A. (ed.). Jervis Bay baseline studies: final report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 1282 pp.

18) Jacoby, C.A. 1994. Monitoring. pp. 963-1026. In: Jacoby, C.A. (ed.). Jervis Bay baseline studies: final report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 1282 pp.

19) Jacoby, C.A. (editor). 1994. Jervis Bay baseline studies: final report. Report submitted to the Australian Department of Defence as part of the Jervis Bay Environmental Study. 1282 pp.

20) Jacoby, C.A. 1994. Review of macrophyte sampling in the Hawkesbury-Nepean River. Report commissioned by the New South Wales Environmental Protection Authority. 2 pp.

21) Scientific Advisory Group. 1995. Review of Stage 1 briefs at 90% completion. Report submitted to the Brisbane River Moreton Bay Wastewater Management Study. 90 pp.

22) Jacoby, C.A., D., Walker, F. Wells, and K. Hillman. 1995. Project S1: ecological significance of seagrasses. pp. A3.23-A3.34. In: Shellsand dredging environmental management programme. Report submitted to the West Australian Minister for the Environment.

23) Jacoby, C.A. 1995. Project B2: Development of mesocosms. Report submitted to the National Pulp and Paper Research Program. 217 pp.

24) Jacoby, C.A. 1995. Environmental impacts of exploration drilling on the northwest shelf of Australia. Report submitted to Apache Energy Pty. Ltd. 33 pp.

25) Jacoby, C.A. 1995. Review of the final report for the Southern Metropolitan Perth Coastal Waters Study. 7 pp.

26) Jacoby, C.A. 1995. Project 4: Sediments, Subproject 4A: Biological influences on the transport, fate and impact of contaminants in sediments. Report submitted to the CSIRO Coastal Zone Program. 5 pp.

27) Jacoby, C.A. 1995. Project 4A: Sediments: Biological influences on the transport, fate and impact of contaminants in sediments. Report submitted to the CSIRO Coastal Zone Program. 17 pp.

28) Jacoby, C.A. and D.H. Heinemann. 1996. Design of the WAPET coral monitoring program. Report submitted to West Australian Petroleum Pty. Ltd. 15 pp.

29) Jacoby, C.A. 1996. Video survey of benthic habitats in Port Phillip Bay. Report submitted to the Port Phillip Bay Environmental Study. 17 pp.

30) Scientific Advisory Group. 1996. Stage 1 Review and Stage 2 Planning. Report submitted to the Brisbane River Moreton Bay Wastewater Management Study and the Brisbane River Management Group. 41 pp.

31) Ward, T., C. Jacoby and S. Blaber. 1996. Proceedings and outcomes: CSIRO Workshop on marine biodiversity. 18 pp. 32) Jacoby, C. 1997. Western Australian Seagrass Workshop. Report submitted to Environment Australia. 27 pp.

33) Jacoby, C. 1997. Review of the Environment Western Australia Draft State of the Environment Report. Report submitted to Western Australia Office of the Auditor General. 5 pp.

34) Jacoby, C. 1997. National Seagrass Workshop. Report submitted to Environment Australia. 55 pp.

35) Jacoby, C., B. Griffiths, S. Braine and P. Jernakoff. 1998. Seagrass monitoring at HMAS Stirling. Report submitted to HMAS Stirling. 39 pp.

36) Jacoby, C., G. Syme and B. Nancarrow. 1998. Perth coastal waters management and consultative process: environmental values, environmental quality objectives and draft boundaries: initial draft discussion paper. Report to the Western Australian Environmental Protection Authority and Department of Environmental Protection. 49 pp.

37) Jacoby, C. G. Syme, B. Nancarrow and P. Colgan. 1998. The future of Perth coastal waters: have your say. A discussion paper addressing environmental values, environmental quality objectives and draft environmental quality management zones. Report to the Western Australian Environmental Protection Authority and Department of Environmental Protection. 50 pp

. 38) Jacoby, C., G. Syme and P. Colgan. 1999. Perth coastal waters public involvement process: environmental values, environmental quality objectives, draft environmental quality management zones, volume 1. Report to the Western Australian Environmental Protection Authority and Department of Environmental Protection. 76 pp.

39) Jacoby, C., G. Syme and P. Colgan. 1999. Perth coastal waters public involvement process: environmental values, environmental quality objectives, draft environmental quality management zones, volume 2: appendices. Report to the Western Australian Environmental Protection Authority and Department of Environmental Protection. 314 pp.

40) Tan, C. C. Jacoby, G. Georgaklis, C.J. Drummond, J. Churchman, W. Gates, B. Wu, S. Tsaganas, L. Connelly, G. Lupton, M. Camilleri and G. Carson. 1999. Development of high membrane efficiency water-based drilling fluids, Progress report no. 1. Report to Baroid Drilling Fluids, Inc. 135 pp.

41) Tan, C. C. Jacoby, G. Georgaklis, C.J. Drummond, J. Churchman, W. Gates, I.J.A. Baker, B. Wu, Md. Amanullah, S. Tsaganas, M. Camilleri, G. Lupton, G. Carson and L. Connelly. 1999. Development of high membrane efficiency water-based drilling fluids, Progress report no. 2. Report to Baroid Drilling Fluids, Inc. 105 pp.

42) Tan, C. C. Jacoby, G. Georgaklis, C.J. Drummond, Md. Amanullah, I.J.A. Baker, J. Churchman, W. Gates, B. Wu, M. Camilleri, S. Tsaganas, G. Lupton, G. Carson, L. Connelly, D. Wells and S. King. 1999. Development of high membrane efficiency water-based drilling fluids, Progress report no. 3. Report to Baroid Drilling Fluids, Inc. 255 pp.

43) Tan, C. Md. Amanullah, C. Jacoby, D. Wells, C.J. Drummond, G. Georgaklis, J. Churchman, W. Gates, B. Wu, M. Camilleri, S. Tsaganas, and L. Connelly. 1999. Development of high membrane efficiency water-based drilling fluids, Progress report no. 4. Report to Baroid Drilling Fluids, Inc. 181 pp.

44) Tan, C. C. Jacoby, Md. Amanullah, G. Georgaklis, C.J. Drummond, I.J.A. Baker, D. Wells, J. Churchman, W. Gates, B. Wu, M. Camilleri, S. Tsaganas, G. Lupton, G. Carson and L. Connelly. 1999. Development of high membrane efficiency water-based drilling fluids, first year summary report. Report to Baroid Drilling Fluids, Inc. 4 pp.

45) Tan, C. Md. Amanullah, C. Jacoby, D. Wells, C.J. Drummond, J. Churchman, W. Gates, B. Wu, M. Camilleri, S. Tsaganas, L. Connelly and S. McClure. 2000. Development of high membrane efficiency water-based drilling fluids, Progress report no. 5. Report to Baroid Drilling Fluids, Inc. 144 pp.

46) Jacoby, C. 2000. Delivering value to Woodside. Report to Woodside and the CSIRO Petroleum Sector. CSIRO Environmental Projects Office. 3 pp.

47) Jacoby, C., B. Griffiths, S. Braine and P. Jernakoff. 2000. Seagrass monitoring at HMAS Stirling. HMAS Stirling Environmental Working Paper No. 13. 40 pp.

48) Jacoby, C. 2000. Delivering environmental services to the oil and gas industry. Report to the CSIRO Petroleum Sector. CSIRO Environmental Projects Office. 4 pp.

49) Jacoby, C.A. 2000. Supporting the upstream petroleum industry in Western Australia: CSIRO's capabilities for delivering environmental services. Capability statement for the Western Australian Department of Minerals and Energy. 12 pp.

50) Jacoby, C.A. 2000. Supporting the petroleum industry: CSIRO's capabilities for delivering environmental services. Capability statement for the CSIRO Petroleum Sector. 13 pp.

51) Jacoby, C., D. Fox and R. Molloy. 2000. Receiving waters monitoring program for the Eastern Treatment Plant effluent discharge at Boags Rocks: "building the framework". Report to Melbourne Water. 18 pp.

52) Jacoby, C., D. Fox and R. Molloy. 2000. Eastern Treatment Plant: choosing indicators for monitoring of the receiving environment. Report to Melbourne Water. 15 pp.

53) Fox, D., C. Jacoby and R. Molloy. 2000. Eastern Treatment Plant: monitoring the receiving environment, part A: background review and data analysis. Report to Melbourne Water. 130 pp.

54) Fox, D., C. Jacoby and R. Molloy. 2000. Eastern Treatment Plant monitoring program: 2001-2003. Report to Melbourne Water. 36 pp.